Installation

Command line installation using conda

The recommended way to install chromIDEAS (including its requirements) is via miniconda or micromamba.

$ conda install fatyang::chromideas

Command line installation using source code

chromIDEAS can also be installed step by step.

  1. Download the software package source code file from GitHub:

$ wget -c https://github.com/fatyang799/chromIDEAS/releases/download/v1.0-0/chromideas-1.0-0.tar.gz
$ tar xzf chromideas-1.0-0.tar.gz
$ cp -r chromIDEAS /PATH/TO/TARGET/

  1. Configure system settings:

# replace the '/PATH/TO/TARGET/' with your actual target path
$ echo "export CONDA_PREFIX='/PATH/TO/TARGET/'" >> ~/.bashrc
$ source ~/.bashrc